Citations

Mandrake paper (forthcoming):

Lees J, Tonkin-Hill G, Yang Z, Corander J. Visualising pathogen population structures by embedding millions of genomes into lower dimensional representations. 2021.

The original SCE preprint:

Yang Z, Chen Y, Sedov D, Kaski S, Corander J. Stochastic Cluster Embedding. arXiv [cs.LG]. 2021. Available: http://arxiv.org/abs/2108.08003

Original SCE code:

https://github.com/rozyangno/sce