Citations
Mandrake paper:
Lees JA, Tonkin-Hill G, Yang Z, Corander J. Mandrake: visualizing microbial population structure by embedding millions of genomes into a low-dimensional representation. Philosophical Transactions of The Royal Society B. 2022;377: 20210237.
https://doi.org/10.1098/rstb.2021.0237
Stochastic Cluster Embedding paper:
Yang Z, Chen Y, Sedov D, Kaski S, Corander J. Stochastic cluster embedding. Stat Comput 33, 12 (2023).
https://doi.org/10.1007/s11222-022-10186-z
Original SCE code: